MRI Data Analyses


We collectively possess experiences and competencies in the following areas:

Structural MRI Analyses

  • Volume-based functionalneuroimaging using the following software packages:
    • Statistical Parametric Mapping 8/12
    • FMRIB Software Library v5.0
  • Voxel-basedmorphometry structuralneuroimaging analyses:
    • Statistical Parametric Mapping (SPM) 8, 12
    • VBM Toolbox (for SPM8/12)
    • CIVET Pipeline, McGill University
    • FMRIB Software Library v5.0 (FSL)
  • Surface-basedmorphometry structuralneuroimaging analyses:
    • CIVET Pipeline, McGill University
    • SurfStat, McGill University
    • FreeSurfer

Functional MRI Analyses

  • fMRI experimental design, optimization
    • Task efficiency evaluation
    • Data pilot
  • fMRI task development with:
    • E-Prime Professional 1.1, 2.0
    • PsychToolbox (Matlab)
    • The Psychology Experiment Building Language (PEBL)
  • Functional / Resting State connectivity analyses:
    • Neuroimaging Analysis Kit (NIAK)
    • CONN 14
  • Region of Interest beta extraction for functional tasks.
    • MarsBar tool box for SPM suite

MRI Statistical Interpretation

  • Non-Parametric functionalneuroimaging analyses:
    • Statistical Non-Parametric Mapping (SnPM)
    • TFCE (FSL)
  • Statistical Parametric Mapping analyses
    • FSL
    • SPM 5, 8, 12
  • Anatomical Interpretation of Findings:
  • ROI statistical analyses:
    • MarsBar

Relevant Skills

  • Programming Competencies in:
    • C#, C/C++, .Net, Java, SVN, Git, SQL, WCF, MFC, Agile, Scrum;
    • Visual Studio, MS Project, MS Office, TeamCity, Target Process, TeamViewer;
    • 3D analysis algorithms, 2D image processing.
    • Matlab & SPM 8/12
    • visual basic for application (VBA for Excel/Powerpoint/Access)
  • Data Management:
    • Microsoft Access
    • Basic SQL database